ybdO

unknown

locus: BSU_02050

pI: 5.36

mw: 44.68 kDa

protein length: 394 aa

gene length: 1185 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 6|Groups of genes] → [category|SW 6.12|Secreted proteins]
• [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

Gene

Coordinates: 225,064 226,248

The protein

[SW|Localization]

• extracellular (signal peptide) [Pubmed|18957862]

Expression and Regulation

Operons

• genes: [gene|283FB32C92417EA7DFE86FAC2E7FFBD6165B0A5F|ybdO]
  description: [Pubmed|15033535]

  sigma factors

  • [protein|7024E4162A6D827069F882FDEACA696EBC05DD40|SigD]: sigma factor, [Pubmed|15033535], in [regulon|7024E4162A6D827069F882FDEACA696EBC05DD40|SigD regulon]

  regulatory mechanism

  • [protein|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB]: repression, [Pubmed|18840696], in [regulon|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB regulon]

  regulation

  • repressed by casamino acids [http://www.ncbi.nlm.nih.gov/pubmed/12107147 PubMed

Biological materials

Mutant

• MGNA-B960 (ybdO::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1959 NBRP B. subtilis, Japan]
• BKE02050 ([gene|283FB32C92417EA7DFE86FAC2E7FFBD6165B0A5F|ybdO]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE02050 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGAATTCCCTCCCGAGT, downstream forward: _UP4_TAGGTAAGCTGTTCATGTAG
• BKK02050 ([gene|283FB32C92417EA7DFE86FAC2E7FFBD6165B0A5F|ybdO]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK02050 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGAATTCCCTCCCGAGT, downstream forward: _UP4_TAGGTAAGCTGTTCATGTAG

References

• 18957862,15033535,18840696,12107147