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ytlD [2019-01-30 13:29:41]
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ytlD [2019-01-30 13:29:41]

similar to ABC transporter (permease)
locus
BSU30620
pI
9.77
mw
30.15 kDa
protein length
270 aa Sequence Blast
gene length
813 bp Sequence Blast
function
unknown
product
ABC transporter (permease)
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.4|Unknown ABC transporters]
  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.4|Sporulation proteins/ other]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]
  • Gene

    Coordinates
    3,134,144 3,134,956

    The protein

    Protein family

  • binding-protein-dependent transport system permease family (according to Swiss-Prot)
  • Expression and Regulation

    Operons

    genes
    [gene|56E482D9CAC6E350140FD21A1C4AC8820B918CDA|ytlA]-[gene|3DC6A032B0F076A460FE2C3244D747CFC7583FE7|ytlC]-[gene|2768A088A2902FA776CB656F29A6F4B0C9E69CA7|ytlD]
    description
    [Pubmed|9387221]

    sigma factors

  • [protein|24F7FD5C7C3A68BB2760ABB8CBD8FBD65E5FF7D4|SigK]: sigma factor, [Pubmed|15699190,15383836], in [regulon|24F7FD5C7C3A68BB2760ABB8CBD8FBD65E5FF7D4|SigK regulon]
  • regulation

  • expressed late during sporulation in the mother cell ([protein|search|SigK]) [Pubmed|15699190,15383836]
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    Biological materials

    Mutant

  • MGNA-A298 (ytlD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/298 NBRP B. subtilis, Japan]
  • BKE30620 ([gene|2768A088A2902FA776CB656F29A6F4B0C9E69CA7|ytlD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE30620 BGSC], [Pubmed|28189581], upstream reverse: _UP1_GAATTGATACTGCTCGTGAA, downstream forward: _UP4_TAAAAAACCCGGCACATGTG
  • BKK30620 ([gene|2768A088A2902FA776CB656F29A6F4B0C9E69CA7|ytlD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK30620 BGSC], [Pubmed|28189581], upstream reverse: _UP1_GAATTGATACTGCTCGTGAA, downstream forward: _UP4_TAAAAAACCCGGCACATGTG
  • References

  • 10092453,15699190,15383836,9387221