SubtiBank SubtiBank
yndF [2019-06-19 13:08:18]
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yndF [2019-06-19 13:08:18]

part of the [protein|AE28299B0F274B189DD90554A5A4F7B9A9479B60|YndD]-[protein|B14179D0EF5D3493E5CDB8E15378A5088B4FFD10|YndE]-[protein|2211659780DEC3F4131B127E68EEF626534DF4BE|YndF] germinant receptor of unknown specificity
locus
BSU17770
pI
7.26
mw
44.66 kDa
protein length
404 aa Sequence Blast
gene length
1215 bp Sequence Blast
function
[category|SW 4.2.4|Germination]
product
part of the [protein|AE28299B0F274B189DD90554A5A4F7B9A9479B60|YndD]-[protein|B14179D0EF5D3493E5CDB8E15378A5088B4FFD10|YndE]-[protein|2211659780DEC3F4131B127E68EEF626534DF4BE|YndF] germinant receptor
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.5|Germination/ based on similarity]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    1,910,167 1,911,381

    The protein

    Protein family

  • gerABKC lipoprotein family (according to Swiss-Prot)

    • Structure

  • [PDB|3N54] ([protein|93D4D6864686E6E559E6CEFA69BAC77EEFAA1BE3|GerBC], 29% identity) [pubmed|20654628]

    • [SW|Localization]

  • cell membrane (according to UniProt)

    • Expression and Regulation

    Operons

    genes
    [gene|AE28299B0F274B189DD90554A5A4F7B9A9479B60|yndD]-[gene|B14179D0EF5D3493E5CDB8E15378A5088B4FFD10|yndE]-[gene|2211659780DEC3F4131B127E68EEF626534DF4BE|yndF]
    description
    [Pubmed|16497325]

    sigma factors

  • [protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG]: sigma factor, [Pubmed|15699190,16497325], in [regulon|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG regulon]

    • regulation

  • expressed late during sporulation in the forespore ([protein|search|SigG]) [Pubmed|15699190,16497325]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-A024 (yndF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/24 NBRP B. subtilis, Japan]
  • BKE17770 ([gene|2211659780DEC3F4131B127E68EEF626534DF4BE|yndF]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE17770 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGCAGGCAATTGACGTT, downstream forward: _UP4_TAATGAATCCCAAGGAAGAG
  • BKK17770 ([gene|2211659780DEC3F4131B127E68EEF626534DF4BE|yndF]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK17770 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGCAGGCAATTGACGTT, downstream forward: _UP4_TAATGAATCCCAAGGAAGAG

    • References

  • 15699190,16497325,10762253,20654628