ydjO

unknown

locus: BSU_06270

pI: 7.64

mw: 7.71 kDa

protein length: 69 aa

gene length: 210 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.2|Cell envelope stress proteins (controlled by SigM, V, W, X, Y)]
• [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.5|Cold stress proteins]
• [category|SW 6|Groups of genes] → [category|SW 6.4|Phosphoproteins] → [category|SW 6.4.1|Phosphorylation on an Arg residue]

Gene

Coordinates: 681,255 681,464

The protein

Modification

• phosphorylated on Arg-7 [Pubmed|22517742]

additional information

• [protein|1F845CE702BCD10F4DB596E438CE9DB076806B1D|YdjO] may interact with [SW|RNA polymerase] [pubmed|21710567]

Expression and Regulation

Operons

• genes: [gene|D30ADD18D86E153482FE2BFC621230FEE5912BF9|yeaA]-[gene|322BE299860795A70EFA78B8E2614CCCC1CE7C87|ydjP]-[gene|1F845CE702BCD10F4DB596E438CE9DB076806B1D|ydjO]
  description: [Pubmed|9987136]

  sigma factors

  • [protein|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|SigW]: sigma factor, [Pubmed|9987136], in [regulon|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|SigW regulon]
  • [protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE]: sigma factor, [Pubmed|15699190], in [regulon|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE regulon]

  regulation

  • induced by cold shock [Pubmed|12399512]

Biological materials

Mutant

• MGNA-C222 (ydjO::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2220 NBRP B. subtilis, Japan]
• BKE06270 ([gene|1F845CE702BCD10F4DB596E438CE9DB076806B1D|ydjO]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE06270 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAAAGTCACTTCTTCCCT, downstream forward: _UP4_TAGTTCTTCCCTATAACAAA
• BKK06270 ([gene|1F845CE702BCD10F4DB596E438CE9DB076806B1D|ydjO]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK06270 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAAAGTCACTTCTTCCCT, downstream forward: _UP4_TAGTTCTTCCCTATAACAAA

References

• 9987136,12399512,22517742,21710567