SubtiBank SubtiBank
yoaJ [2017-06-28 15:23:35]
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yoaJ [2017-06-28 15:23:35]

bacterial expansin, binds cellulose, required for the colonization of maize roots
locus
BSU18630
pI
9.45
mw
25.49 kDa
protein length
232 aa Sequence Blast
gene length
696 bp Sequence Blast
function
interaction with plant roots
product
expansin
essential
no

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.4|Lifestyles/ miscellaneous]
  • [category|SW 6|Groups of genes] → [category|SW 6.12|Secreted proteins]
  • Gene

    Coordinates
    2,032,927 → 2,033,625

    Phenotypes of a mutant

  • strongly reduced ability to colonize maize roots [Pubmed|18971341]
  • The protein

    Protein family

  • expansin [Pubmed|18971341]
  • Structure

  • [PDB|3D30] [Pubmed|18971341]
  • [SW|Localization]

  • extracellular [Pubmed|18971341]
  • Expression and Regulation

    Operons

    genes
    [gene|17094CBA2DDFB82B5FC064AADB85DAB60A15B2C0|yoaJ]
    description
    [Pubmed|12354229]

    regulatory mechanism

  • [protein|F899F1EE27E6D503BCC06BC52E3C7FD80B8EF725|Fur]: repression, [pubmed|12354229], in [regulon|F899F1EE27E6D503BCC06BC52E3C7FD80B8EF725|Fur regulon]
  • regulation

  • induced upon iron starvation ([protein|search|Fur]) [Pubmed|12354229]
  • view in new tab

    Biological materials

    Mutant

  • MGNA-A839 (yoaJ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/839 NBRP B. subtilis, Japan]
  • References

    Reviews

  • 25833181,27365165
  • Original publications

  • 19058186,15604683,16984999,22927418,18971341,21454649,12354229,23053073,24755657,22949138,26521249,26751268,27365165