SubtiBank SubtiBank
ymfD [2018-10-04 20:31:56]
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ymfD [2018-10-04 20:31:56]

exporter for the siderophore bacillibactin
locus
BSU16825
pI
8.36
mw
44.00 kDa
protein length
402 aa Sequence Blast
gene length
1206 bp Sequence Blast
function
iron acquisition
product
bacillibactin exporter
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.4|Transporters/ other] → [category|SW 1.2.4.10|Siderophore exporters]
  • [category|SW 1|Cellular processes] → [category|SW 1.3|Homeostasis] → [category|SW 1.3.3|Acquisition of iron] → [category|SW 1.3.3.3|Acquisition of iron / Other]
  • [category|SW 2|Metabolism] → [category|SW 2.6|Additional metabolic pathways] → [category|SW 2.6.5|Iron metabolism] → [category|SW 2.6.5.1|Acquisition of iron / Other]
  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.5|Newly identified sporulation proteins (based on transcription profiling)]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    1,755,649 → 1,756,857

    The protein

    Protein family

  • major facilitator superfamily (according to Swiss-Prot)

    • [SW|Localization]

  • cell membrane (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    genes
    [gene|11997FE6BA6947E7C7E3DBE20B49C9FB758262B2|ymfD]-[gene|43BADA6A6C8248270A50EB3D81253ECE6C84F03F|ymfF]-[gene|9A5EB7CA38D948007AD788297128035AB4074490|ymfH]
    description
    [Pubmed|18502870]

    regulatory mechanism

  • [protein|A7326377132C670B60695EFE0A652B1E4F623698|Mta]: activation, [Pubmed|18502870], in [regulon|A7326377132C670B60695EFE0A652B1E4F623698|Mta regulon]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-B116 (ymfD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1115 NBRP B. subtilis, Japan]
  • BKE16825 (Δ[gene|11997FE6BA6947E7C7E3DBE20B49C9FB758262B2|ymfD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE16825 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCCATTTTTCTCTCTCA, downstream forward: _UP4_TAGCCAGCCGTCTTTTTTTG
  • BKK16825 (Δ[gene|11997FE6BA6947E7C7E3DBE20B49C9FB758262B2|ymfD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK16825 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCCATTTTTCTCTCTCA, downstream forward: _UP4_TAGCCAGCCGTCTTTTTTTG

    • References

  • 18502870