SubtiBank SubtiBank
ygaD [2018-05-04 17:40:54]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

ygaD [2018-05-04 17:40:54]

similar to ABC transporter (ATP-binding protein)
locus
BSU08690
pI
7.03
mw
66.59 kDa
protein length
589 aa Sequence Blast
gene length
1767 bp Sequence Blast
function
unknown
product
ABC transporter (ATP-binding protein)
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.2|Exporters] → [category|SW 1.2.1.2.6|Exporters of unknown function]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    939,322 → 941,091

    The protein

    Protein family

  • [SW|ABC transporter] domain (according to Swiss-Prot)

    • [SW|Domains]

  • has both a membrane-spanning and an ATP-binding domain [Pubmed|10092453]

    • [SW|Localization]

  • cell membrane [Pubmed|10092453]

    • Expression and Regulation

    Operons

    genes
    [gene|FFC7595CD0930089B768BB36816A3FE470501236|ygaC]-[gene|0EB4D3E1B9AF39ECCBD79EB559FAE5BB0EE4C156|ygaD]
    description
    [Pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-A244 (ygaD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/244 NBRP B. subtilis, Japan]
  • BKE08690 (Δ[gene|0EB4D3E1B9AF39ECCBD79EB559FAE5BB0EE4C156|ygaD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE08690 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACGGTTGATTCCCCCTCTC, downstream forward: _UP4_TAAAACATCAATCTTATATC
  • BKK08690 (Δ[gene|0EB4D3E1B9AF39ECCBD79EB559FAE5BB0EE4C156|ygaD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK08690 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACGGTTGATTCCCCCTCTC, downstream forward: _UP4_TAAAACATCAATCTTATATC

    • References

  • 10092453