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yxxD [2019-05-12 18:21:31]
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yxxD [2019-05-12 18:21:31]

antitoxin
locus
BSU39290
pI
3.93
mw
17.52 kDa
protein length
147 aa Sequence Blast
gene length
444 bp Sequence Blast
function
inhibition of the cytotoxic activity of YxiD
product
antitoxin
essential
yes
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.17|Toxins, antitoxins and immunity against toxins] → [category|SW 4.3.17.2|Type 2 TA systems]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.18|Toxins, antitoxins and immunity against toxins/ based on similarity]
  • [category|SW 6|Groups of genes] → [category|SW 6.1|Essential genes]

    • Gene

    Coordinates
    4,036,344 4,036,787

    Phenotypes of a mutant

  • essential [Pubmed|28189581]

    • Expression and Regulation

    Operons

    genes
    [gene|75B0239578C92D4F3B298CBB077635BF5567C590|yxiB]-[gene|F44437883F39E5240D36340A7DD07803C5090ABB|yxiC]-[gene|BD8C0563C7123B6DEC1EEB602BDF2C9D92D34991|yxiD]-[gene|0DAFBDDC5E41592D06F97D404E75AF14B6783729|yxxD]-[gene|2710D9FD5FA50E09B4E482C13140F69B13C71861|yxxE]
    description
    [Pubmed|22383849,7883710,10746760]
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    Biological materials

    Mutant

  • MGNA-B786 (yxxD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1785 NBRP B. subtilis, Japan]
  • BKE39290 ([gene|0DAFBDDC5E41592D06F97D404E75AF14B6783729|yxxD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE39290 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ACTCATTTTTTTTTGCCTCC, downstream forward: _UP4_TGATTTTAACATTATCCCGT
  • BKK39290 ([gene|0DAFBDDC5E41592D06F97D404E75AF14B6783729|yxxD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK39290 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ACTCATTTTTTTTTGCCTCC, downstream forward: _UP4_TGATTTTAACATTATCCCGT

    • References

  • 7883710,10746760,22200572,28189581