ydgC

similar to transcription factor ([SW|TetR family])

locus: BSU_05580

pI: 5.57

mw: 21.92 kDa

protein length: 195 aa

gene length: 588 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

Gene

Coordinates: 603,012 603,599

The protein

Protein family

• [SW|TetR family]

[SW|Domains]

• [SW|HTH tetR-type domain] (aa 6-66) (according to UniProt)

Structure

• [PDB|5GPA] ([protein|8A8F93BAD0582F712C9EE1C3FE6C04292E91F390|FadR] from B. halodurans, 26% identity)

Expression and Regulation

Operons

• genes: [gene|0C2CD998B933D7458DBC4E80A596801274AC43F9|ydgC]-[gene|6DD46B2E342994CB97C13C00AB264B2D62184223|ydgD]-[gene|07A30814F57112196051289AA309AE6DB22CAEFF|ydgE]
  description: [Pubmed|22383849]

Biological materials

Mutant

• MGNA-C157 (ydgC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2155 NBRP B. subtilis, Japan]
• BKE05580 ([gene|0C2CD998B933D7458DBC4E80A596801274AC43F9|ydgC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05580 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAACTAGGACCACCCCAAAA, downstream forward: _UP4_CTTCCGAAAGGGAATGATGT
• BKK05580 ([gene|0C2CD998B933D7458DBC4E80A596801274AC43F9|ydgC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05580 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAACTAGGACCACCCCAAAA, downstream forward: _UP4_CTTCCGAAAGGGAATGATGT