SubtiBank SubtiBank
yrkH
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yrkH

unknown
locus
BSU_26510
pI
4.85
mw
32.73 kDa
protein length
377 aa Sequence Blast
gene length
1134 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]
  • Gene

    Coordinates
    2,711,109 2,712,242

    The protein

    [SW|Domains]

  • C-terminal metallo--lactamase domain (according to UniProt)
  • [SW|Rhodanese domain] (aa 19-114) (according to UniProt)
  • Structure

  • [PDB|3R2U] (metallo--lactamase from Staphylococcus aureus, corresponds to the C-terminal domain of [protein|06CC915A18E5ADD42B784B7BBBFD4C344559A34E|YrkH], aa 142 ... 353, 31% identity)
  • Expression and Regulation

    Operons

    genes
    [gene|6AD1DD074B2F044C6A4E4B98FABC4E7FD67B3139|yrzM]-[gene|8A3F1BFDF85DD96B7FB4EBC807F71639AF69DE98|yrkD]-[gene|1F1FE531622CD218EE8990CDAC6D2D2F9E86FE3F|yrkE]-[gene|5FC3DF596816AA4E8541B324EC6DE6D89C90C8E2|yrkF]-[gene|06CC915A18E5ADD42B784B7BBBFD4C344559A34E|yrkH]-[gene|D996F581E21395C3F9CC064800C49A765EFC17A7|yrkI]-[gene|F3E842844B315FE438F66995CDFB8BA1C32BDF23|yrkJ]-[gene|1BEBD09273240B6B50DABCB160FCCBC205BB2AAE|yrkK]-[gene|search|yrkM]
    description
    [Pubmed|22383849]
    view in new tab

    genes
    [gene|6AD1DD074B2F044C6A4E4B98FABC4E7FD67B3139|yrzM]-[gene|8A3F1BFDF85DD96B7FB4EBC807F71639AF69DE98|yrkD]-[gene|1F1FE531622CD218EE8990CDAC6D2D2F9E86FE3F|yrkE]-[gene|5FC3DF596816AA4E8541B324EC6DE6D89C90C8E2|yrkF]-[gene|06CC915A18E5ADD42B784B7BBBFD4C344559A34E|yrkH]-[gene|D996F581E21395C3F9CC064800C49A765EFC17A7|yrkI]
    description
    [Pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-C463 (yrkH::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2461 NBRP B. subtilis, Japan]
  • BKE26510 ([gene|06CC915A18E5ADD42B784B7BBBFD4C344559A34E|yrkH]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE26510 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATACCTCCTATATCAAAT, downstream forward: _UP4_TAACACAAGTTTCTGCTAAA
  • BKK26510 ([gene|06CC915A18E5ADD42B784B7BBBFD4C344559A34E|yrkH]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK26510 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATACCTCCTATATCAAAT, downstream forward: _UP4_TAACACAAGTTTCTGCTAAA