SubtiBank SubtiBank
yodA
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yodA

similar to malonate semialdehyde decarboxylase
locus
BSU_19530
pI
4.74
mw
14.46 kDa
protein length
129 aa Sequence Blast
gene length
390 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]
  • Gene

    Coordinates
    2,126,549 2,126,938

    The protein

    Protein family

  • [SW|4-oxalocrotonate tautomerase family] (according to UniProt)
  • Paralogous protein(s)

  • [protein|877C25D538BAF1132290BAF7FBB2E7921B51266A|YusQ], [protein|9A56CC9B3C33D74A7349112930ADF627099DA907|YrdN]
  • Structure

  • [PDB|2AAG] (from Pseudomonas pavonaceae, 52% identity) [pubmed|16274229]
  • Expression and Regulation

    Operons

    genes
    [gene|1F6B2CF88F5C6498A035FA0465136EF9D0BF93BC|yodA]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-B432 (yodA::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1431 NBRP B. subtilis, Japan]
  • BKE19530 ([gene|1F6B2CF88F5C6498A035FA0465136EF9D0BF93BC|yodA]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE19530 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTGTACTCCTCCTCTTA, downstream forward: _UP4_TAAGATTTCGTCTCCCCACA
  • BKK19530 ([gene|1F6B2CF88F5C6498A035FA0465136EF9D0BF93BC|yodA]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK19530 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTGTACTCCTCCTCTTA, downstream forward: _UP4_TAAGATTTCGTCTCCCCACA
  • References

    Research papers

  • 16274229