SubtiBank SubtiBank
ylqC
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ylqC

unknown
locus
BSU_16000
pI
7.34
mw
8.93 kDa
protein length
81 aa Sequence Blast
gene length
246 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    1,673,892 1,674,137

    The protein

    Protein family

  • UPF0109 family (single member, according to UniProt)

    • [SW|Domains]

  • KH domain (aa 34-81) (according to UniProt)

    • Expression and Regulation

    Operons

    genes
    [gene|8F559BFC80FE56EA0389A2336F4E9E6908562BCB|ylxM]-[gene|EC025F78D0BCBD91162BAAB9EAB7D3837E0A3208|ffh]-[gene|25C4850812DC216C1BEFBF07DCA71CC6820930B0|rpsP]-[gene|67FB5F6FB0B2701BD8E4FDD8DF06B236DE6A2599|ylqC]-[gene|0AB1FB44E8F28944B82B5EF14A9CDCFEE46DB76B|ylqD]-[gene|34B0FA6E7E25D1E5D8A54B70F5562BD0BD05B498|rimM]-[gene|885ECD9FAAC8BC95D32F049825D6B6244C046112|trmD]-[gene|51368512B8322EDBCA92674EC2B97CF26087D8A9|rplS]
    description
    [Pubmed|29794222]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|8335643], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • regulation

  • the mRNA is processed between [gene|EC025F78D0BCBD91162BAAB9EAB7D3837E0A3208|ffh] and [gene|25C4850812DC216C1BEFBF07DCA71CC6820930B0|rpsP] by [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y], this requires the [protein|EE52DFA35B935E551871D079A9BE877DB2001A3B|YmcA]-[protein|6C9A092F38739A3759793EF8B496569CD02C2E3F|YlbF]-[protein|EBD15C174A03B7FCDFFE4C5DB5D86E93F1B9CAC4|YaaT] complex [Pubmed|29794222]
    • view in new tab

    genes
    [gene|25C4850812DC216C1BEFBF07DCA71CC6820930B0|rpsP]-[gene|67FB5F6FB0B2701BD8E4FDD8DF06B236DE6A2599|ylqC]
    description
    [Pubmed|8335643]

    regulatory mechanism

  • [regulon|stringent response|stringent response]: negative regulation, in [regulon|stringent response|stringent response]

    • regulation

  • [protein|search|RelA] dependent downregulation (Class I) during stringent response [Pubmed|11948165]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-B173 (ylqC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1172 NBRP B. subtilis, Japan]
  • 1A827 ( ''ylqC''::''erm''), [Pubmed|12682299], available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A827&Search=1A827 BGSC]
  • BKE16000 ([gene|67FB5F6FB0B2701BD8E4FDD8DF06B236DE6A2599|ylqC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE16000 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ATCTTCCAAGTGTTGATCAG, downstream forward: _UP4_TAAAAGGGAGAGGGCCGGCA
  • BKK16000 ([gene|67FB5F6FB0B2701BD8E4FDD8DF06B236DE6A2599|ylqC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK16000 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ATCTTCCAAGTGTTGATCAG, downstream forward: _UP4_TAAAAGGGAGAGGGCCGGCA

    • References

  • 8335643