SubtiBank SubtiBank
yjbO
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yjbO

similar to pseudouridylate synthase
Locus
BSU_11620
Isoelectric point
6.55
Molecular weight
31.32 kDa
Protein length
283 aa Sequence Blast
Gene length
852 bp Sequence Blast
Function
RNA modification
Product
putative pseudouridylate synthase
Essential
no
Synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      
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Categories containing this gene/protein

  • Information processing → Protein synthesis, modification and degradation → Translation → rRNA modification and maturation/ based on similarity

    • Gene

    Coordinates
    1,238,523 1,239,374

    The protein

    Catalyzed reaction/ biological activity

  • uridine in RNA --> ψ-uridine in RNA (according to UniProt)

    • Protein family

  • S4 RNA-binding domain superfamily (according to http://www.ebi.ac.uk/interpro/entry/IPR036986 Interpro)
  • pseudouridine synthase RluA family (with YhcT and YlyB, according to UniProt)

    • Paralogous protein(s)

  • YlyB, YhcT

    • Domains

  • S4 RNA-binding domain (aa 25-79) (according to UniProt)

    • Structure

  • 1V9F (RluD from E. coli, 40% identical, aa 64 - 279) PubMed

    • Expression and Regulation

    Operons

    Genes
    yjbL-sasB-nadF-yjbO
    Description
    PubMed

    Regulation

  • expressed during exponential growth
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    Biological materials

    Mutant

  • MGNA-B161 (yjbO::erm), available at the NBRP B. subtilis, Japan
  • BKE11620 (yjbO::erm trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATCCCGTCCTCAGCGGAAG, downstream forward: _UP4_GAGAATCATTGATTCTCTCC
  • BKK11620 (yjbO::kan trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATCCCGTCCTCAGCGGAAG, downstream forward: _UP4_GAGAATCATTGATTCTCTCC

    • References

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