SubtiBank SubtiBank
yhcB
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yhcB

similar to oxidoreductase
locus
BSU_09020
pI
4.64
mw
18.87 kDa
protein length
176 aa Sequence Blast
gene length
531 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

    • Gene

    Coordinates
    979,396 979,926

    The protein

    [SW|Domains]

  • [SW|Flavodoxin-like domain] (aa 3-162) (according to UniProt)

    • Structure

  • [PDB|4LA4] (from Pseudomonas sp., 34% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|EDDD61CF725449E57C72F63D378F6CD1FAC49ADA|yhbI]-[gene|211C58A92BA2A06A34B1F73BDB68A0F581B942C2|yhbJ]-[gene|93159DC7D5C42CFA54F66F232D73F38957243AB7|yhcA]-[gene|7797B0B66922D51B9D142DD2E5857836E47F015B|yhcB]-[gene|95EED3A91483502CA78067421F678B1EDB965B18|yhcC]
    description
    [Pubmed|22383849]

    additional information

  • the mRNA is substantially stabilized upon depletion of [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y] (the half-life of the mRNA increases from 4 to 41 min) [PubMed|21815947]
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    Biological materials

    Mutant

  • MGNA-B472 (yhcB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1471 NBRP B. subtilis, Japan]
  • BKE09020 ([gene|7797B0B66922D51B9D142DD2E5857836E47F015B|yhcB]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE09020 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCAGGAAACCTCCCTGT, downstream forward: _UP4_GCAGGACAGTAAGGAGAGGT
  • BKK09020 ([gene|7797B0B66922D51B9D142DD2E5857836E47F015B|yhcB]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK09020 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCAGGAAACCTCCCTGT, downstream forward: _UP4_GCAGGACAGTAAGGAGAGGT

    • References

  • 21815947