SubtiBank SubtiBank
ydcS
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ydcS

unknown
locus
BSU_04880
pI
4.21
mw
10.14 kDa
protein length
89 aa Sequence Blast
gene length
270 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 5|Prophages and mobile genetic elements] → [category|SW 5.2|Mobile genetic elements] → [category|SW 5.2.1|ICEBs1]
  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    536,096 536,365

    Expression and Regulation

    Operons

    genes
    [gene|EE2A4068CBD7A2F852E582E2EDA4148381F1CD61|xis]-[gene|2227923C603B290AB276238F789D71584FB07DF3|ydzL]-[gene|34451538F10B4ABCFC8A236C8C905A20D989EBCF|ydcO]-[gene|C042792D9A643DCFF4A851EFECA3CF2C31E1EDAF|ydcP]-[gene|4BCAA5939CB7F0DF23495BC92C9EF0A0149296A0|ydcQ]-[gene|8E179976C35FE09F92A191D00E497ED4BF28F571|nicK]-[gene|886B2132717BA4C72433ABE351C5791C9DE1432A|S172]-[gene|1699CFBF5400CAF43C6DAE8ADCCE5A360B31F2E9|ydcS]-[gene|9D4918852A1856B1CDD72D49AEA75E51A8602BB6|ydcT]-[gene|62CEABA069CA2970F22B7E0C369D540A2A027A8D|yddA]-[gene|A0AFD543582D2FE8B1139CF69B7B1F7FF0F80265|conB]-[gene|F273A8817E66B44D58FC2BCB6576A30D8616B750|conC]-[gene|F1F898D7A9FDF78D2E5E8F3BF605E0F735D0542A|conD]-[gene|D20F724D8C3E8C758A9FADF133CD43F066BD8D48|conE]-[gene|B3A07E2A61151C33B7C65D1BC58B97BFDB76852D|yddF]-[gene|3356A43B83E2D4D66098F17A751F0912C1553398|conG]-[gene|8D9D81E05BAA8697F002BB1B8DBC5ABBA557353F|cwlT]-[gene|2E4FF80C857B3F40BA835814EC40D6562721AEFE|yddI]-[gene|2FB1C9435AE924F8E450AFA81F800196A871F2D0|yddJ]
    description
    [pubmed|22383849]

    regulatory mechanism

  • [protein|DD1C8F3A4809785BD6A6047D39B42AB2C605E161|ImmR]: repression, [Pubmed|17511812], in [regulon|DD1C8F3A4809785BD6A6047D39B42AB2C605E161|ImmR regulon]

    • regulation

  • strongly induced in the presence of salt (1.2 M NaCl) [pubmed|32419322]
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    Biological materials

    Mutant

  • BKE04880 ([gene|1699CFBF5400CAF43C6DAE8ADCCE5A360B31F2E9|ydcS]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE04880 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTTATCCCTCCAAGTTA, downstream forward: _UP4_TAAGGACAATTTTCCTTATG
  • BKK04880 ([gene|1699CFBF5400CAF43C6DAE8ADCCE5A360B31F2E9|ydcS]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK04880 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTTATCCCTCCAAGTTA, downstream forward: _UP4_TAAGGACAATTTTCCTTATG