SubtiBank SubtiBank
yckA
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yckA

similar to amino acid [SW|ABC transporter] (permease)
locus
BSU_03370
pI
9.43
mw
25.08 kDa
protein length
226 aa Sequence Blast
gene length
681 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.4|Unknown ABC transporters]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    367,305 367,985

    The protein

    Protein family

  • [SW|Binding-protein-dependent transport system permease family] (according to UniProt)

    • Paralogous protein(s)

  • [protein|9400DF25487461E3738DDDC72BDDB1589281409D|TcyB], [protein|FFD5F07480A0E5A74852C69C436EE289BA72FC7F|YxeN]

    • [SW|Domains]

  • [SW|ABC transmembrane type-1 domain] (aa 27-215) (according to UniProt)

    • Structure

  • [PDB|4YMS] (amino acid transporter from Caldanaerobacter subterraneus, 35% identity) [pubmed|25848002]

    • [SW|Localization]

  • cell membrane [Pubmed|10092453]

    • Expression and Regulation

    Operons

    genes
    [gene|7050A2CC4BA2183C3CD22A246846CBCE43D73ABC|yckB]-[gene|1872614A6F7DBF7231348AC3DAE4ED3295ACEB41|yckA]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-C001 (yckA::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1999 NBRP B. subtilis, Japan]
  • BKE03370 ([gene|1872614A6F7DBF7231348AC3DAE4ED3295ACEB41|yckA]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE03370 BGSC], [Pubmed|28189581], upstream reverse: _UP1_AATGCTATTGATCATGGCGT, downstream forward: _UP4_TAAACAAACGTTTCATTAAA
  • BKK03370 ([gene|1872614A6F7DBF7231348AC3DAE4ED3295ACEB41|yckA]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK03370 BGSC], [Pubmed|28189581], upstream reverse: _UP1_AATGCTATTGATCATGGCGT, downstream forward: _UP4_TAAACAAACGTTTCATTAAA

    • References

  • 10092453,25848002