SubtiBank SubtiBank
ybcF
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ybcF

similar to carbonic anhydrase
locus
BSU_01860
pI
4.91
mw
19.36 kDa
protein length
175 aa Sequence Blast
gene length
528 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 5|Prophages and mobile genetic elements] → [category|SW 5.1|Prophages] → [category|SW 5.1.4|Prophage 1]
  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

    • Gene

    Coordinates
    209,633 210,160

    The protein

    Protein family

  • beta-class carbonic anhydrase family (with [protein|E00889289B07BE78CC0C8E0962A55C3B14871E00|YvdA] and [protein|F942C0F4618FACEF35ACA629355BAC288556E7B6|YtiB], according to UniProt)

    • Paralogous protein(s)

  • [protein|E00889289B07BE78CC0C8E0962A55C3B14871E00|YvdA]: (29.4%)
  • [protein|F942C0F4618FACEF35ACA629355BAC288556E7B6|YtiB]: (32%)

    • Expression and Regulation

    Operons

    genes
    [gene|CCDDC414E266D86B9027EA67EA565D87357023B3|ndhF]-[gene|E04C67FB0EA3FFEC8FB68440F4661505C3DFDA29|ybcC]-[gene|5D96DF2F32050BBCEC3811843398FE84DE88F6DF|ybcF]-[gene|EBE0360D89E50EEBB84CC853C6E4B4053DBF8925|ybcH]-[gene|6E063903E9E3B770CAACA9DF98DFA540FAE6FD3D|ybcI]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • BKE01860 ([gene|5D96DF2F32050BBCEC3811843398FE84DE88F6DF|ybcF]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE01860 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATACAGCACACCTCTTCCT, downstream forward: _UP4_TGATGAAATGCAGGTTTAAC
  • BKK01860 ([gene|5D96DF2F32050BBCEC3811843398FE84DE88F6DF|ybcF]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK01860 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATACAGCACACCTCTTCCT, downstream forward: _UP4_TGATGAAATGCAGGTTTAAC