SubtiBank SubtiBank
Category: Sporulation proteins
The papers of the month are back! Check them out! Link here

Category: Sporulation proteins

<< ALL CATEGORIES

4. Lifestyles

4.2. Sporulation

4.2.1. Sporulation proteins

4.2.1.1. Spore coat proteins

important publications

  • 22171814,20451384,22192522,23202530,22262582,24283940,26512126
  • 4.2.1.2. Spore coat protein/ based on similarity

    NameFunction
    yraDunknown
    yraEunknown
    yraFunknown
    yraGunknown
    yvdQprotection of the spore

    4.2.1.3. Small acid-soluble spore proteins

    NameFunction
    sspAprotection of spore DNA
    sspBprotection of spore DNA
    sspCprotection of spore DNA
    sspDprotection of spore DNA
    sspEprotection of spore DNA
    sspFprotection of spore DNA
    sspGprotection of spore DNA
    sspHprotection of spore DNA
    sspIprotection of spore DNA
    sspJprotection of spore DNA
    sspKprotection of spore DNA
    sspLprotection of spore DNA
    sspMprotection of spore DNA
    sspNprotection of spore DNA
    sspOprotection of spore DNA
    sspPprotection of spore DNA

    4.2.1.4. Sporulation proteins/ other

    NameFunction
    adhBunknown
    asdbiosynthesis of threonine, lysine, dipicolic acid, peptidoglycan
    asnObiosynthesis of asparagine
    azoR2resistance to 2-methylhydroquinone
    bdbCoxidative folding of proteins
    bdbDoxidative folding of proteins
    bofAcontrol of [protein|search|SigK] activation
    bofCcontrol of processing of pro-SigK by SpoIVFB
    ccpBunknown
    cdaSsynthesis of c-di-AMP
    chaAcalcium export
    clpCprotein degradation, positive regulator of autolysin ([protein|6A21293823151C6980BF52B31A4B249A8440F2E1|LytC] and [protein|29219315D31BA4ADE41687EFF17FE41D6C23D157|LytD]) synthesis
    coxAresistance of the spore
    csbXunknown
    csfBcontrol of [protein|search|SigG ]and [protein|search|SigE ]activity
    ctaAheme biosynthesis
    ctpBcontrol of [protein|search|SigK] activation
    cwlCmother cell lysis
    cwlDspore cortex peptidoglycan synthesis
    cwlHcell wall metabolism
    dacBcarboxypeptidase
    dacFcarboxypeptidase
    dapAbiosynthesis of lysine and peptidoglycan
    dapGbiosynthesis of lysine and peptidoglycan
    divIBseptum formation
    divICseptum formation
    exoArepair of oxidative DNA damage in spores
    exuRregulation of hexuronate utilization
    exuThexuronate uptake
    fabLfatty acid biosynthesis
    fincontrol of [SW|sporulation]
    fisBrelease of the forespore into the mother cell cytoplasm
    ftsYprotein secretion
    glcUunknown
    glgAglycogen biosynthesis
    glgBglycogen biosynthesis
    glgCglycogen biosynthesis
    glgDglycogen biosynthesis
    glgPglycogen biosynthesis
    glnHglutamine uptake
    glnMglutamine uptake
    glnPglutamine uptake
    glnQglutamine uptake
    hbuT3-hydroxybutyrate utilization
    htrCunknown
    ispGMEP pathway of isoprenoid biosynthesis
    kamAunknown
    katXdetoxification (degradation) of hydrogen peroxide
    ligDnon-homologous end joining DNA repair, repair of gapped DNA substrates
    lonBprotein quality control
    lysAbiosynthesis of lysine
    lytHendospore cortex maturation
    mbl[SW|cell shape] determination
    mcsAcontrol of [protein|908DB17A39D518E84977250C55825E77FA02E391|CtsR] activity
    mcsBcontrol of [protein|908DB17A39D518E84977250C55825E77FA02E391|CtsR] activity
    mmgAmother cell metabolism, leucine utilization
    mmgBmother cell metabolism
    mmgCmother cell metabolism
    mmgDmother cell metabolism
    mmgEmother cell metabolism
    mmgFmother cell metabolism
    murBpeptidoglycan precursor biosynthesis
    murGpeptidoglycan precursor biosynthesis
    nforepair of oxidative DNA damage in spores
    pbpFbifunctional glucosyltransferase/ transpeptidase
    pbpGbifunctional glucosyltransferase/ transpeptidase
    pbpIunknown
    pdaAspore cortex peptidoglycan synthesis
    pdaBspore cortex formation
    pghLpolyglutamic acid degradation
    phoBaquisition of phosphate upon phosphate starvation, ether lipid synthesis
    phoPregulation of phosphate metabolism ([gene|E0430C16C41440633647976A0F9183E24268E198|phoA], [gene|3B95AB3021280215B6B487A348D78FB5797AEEA6|phoB], [gene|597771E2E8EC31ED9B2CC8C0E4D888DEEA80F689|phoD], [gene|F7D869F77E2275110737EF658C58FA1BF742D73F|resABCDE], [gene|72A89412C53703F96F835D26307263F5D1A4AB4E|tagA]-[gene|911A4D957A6C0DFC636A152395119DBFC777DDA2|tagB], [gene|8620DA76A1953D7ACDFA7E46ED81EF1A0D97999C|tagDEF], [[gene|tuaA|tuaA-H]])
    phoRregulation of phosphate metabolism
    prkAcontrol of [protein|search|SigK]-dependent gene expression
    refZrelocalization of the [protein|search|FtsZ ]ring, placement of the sporulation septum
    rppHDNA repair, RNA degradation
    rsfAcontrol of expression of SigF-dependent genes
    sbpunknown
    scoA3-hydroxybutyrate utilization
    scoB3-hydroxybutyrate utilization
    seaAinvolved in spore envelope assembly
    sigFtranscription of [SW|sporulation] genes (early forespore)
    sigGtranscription of [SW|sporulation] genes (late forespore)
    sigKClate mother cell-specific gene expression
    sigKNlate mother cell-specific gene expression
    sodFdetoxification of oxygen radicals
    splAregulation of the splA-splB operon
    splBprotection of spore DNA against photodamage
    spmAgermination
    spmBgermination
    spoIIAAcontrol of SigF activity
    spoIIABcontrol of [protein|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|SigF] activity; phosphorylation and inactivation of [protein|3936E91C062074BFE4284B54A8CC33F35F94F5EE|SpoIIAA]
    spoIIDdissolution of the septal cell wall
    spoIIIAAactivation of [protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG]
    spoIIIABactivation of [protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG]
    spoIIIACactivation of [protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG]
    spoIIIADactivation of [protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG]
    spoIIIAEactivation of [protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG]
    spoIIIAFactivation of [protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG]
    spoIIIAGactivation of [protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG]
    spoIIIAHactivation of [protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG], forespore encasement by the spore coat
    spoIIIDregulation of mother cell gene expression
    spoIIMdissolution of the septal cell wall
    spoIIP
    spoIIQforespore encasement by the spore coat
    spoIIRcontrol of [protein|search|SigE ]activation
    spoIISAprogrammed cell death
    spoIVBcontrol of [protein|search|SigK] activation
    spoIVCAexcision of the skin element, creation of the sigK gene
    spoIVFAcontrol of SigK activation
    spoIVFBprocessing of pro-sigma-K to active [protein|24F7FD5C7C3A68BB2760ABB8CBD8FBD65E5FF7D4|SigKN]
    spoVAAspore maturation
    spoVABspore maturation
    spoVACspore maturation
    spoVAFspore maturation
    spoVBspore cortex peptidoglycan synthesis
    spoVDspore morphogenesis
    spoVEspore cortex peptidoglycan synthesis
    spoVFAdipicolic acid production
    spoVFBdipicolic acid production
    spoVIFrequired for spore coat assembly and resistance
    spoVKspore maturation
    spoVRspore cortex synthesis
    spoVTregulation of forespore gene expression
    spoVVtransport of dipicolinic acid across the outer forespore membrane
    sprBexcision of [SW|SP-beta prophage]
    spsAspore coat polysaccharide synthesis
    spsCspore coat polysaccharide synthesis
    spsDspore coat polysaccharide synthesis
    spsEspore coat polysaccharide synthesis
    spsFspore coat polysaccharide synthesis
    spsGspore coat polysaccharide synthesis
    spsIrhamnose biosynthesis, spore coat polysaccharide synthesis
    spsJrhamnose biosynthesis, spore coat polysaccharide synthesis
    spsKrhamnose biosynthesis, spore coat polysaccharide synthesis
    spsLrhamnose biosynthesis, spore coat polysaccharide synthesis
    sqhCbiosynthesis of sporulenes
    sscAspore coat assembly
    stoAspore cortex formation, maturation of [protein|search|SpoVD ]in the forespore outer membrane
    tlpunknown
    tuaFbiosynthesis of teichuronic acid
    tuaGbiosynthesis of teichuronic acid
    tuaHbiosynthesis of teichuronic acid
    usdrequired for translation of SpoIIID
    uxaAhexuronate utilization
    uxaBhexuronate utilization
    uxuAhexuronate utilization
    yabP[SW|sporulation]
    yabQsporulation
    yabRunknown
    yabTcontrol of DNA integrity during spore development
    ybaKunknown
    ybxHunknown
    ycgFunknown
    ycgGunknown
    yckCunknown
    yckDunknown
    ydcAunknown
    ydcCunknown
    ydfRunknown
    ydfSunknown
    ydgAunknown
    ydgBunknown
    ydhFunknown
    ydjPunknown
    yeaAunknown
    yesJunknown
    yesKunknown
    yfnDunknown
    yfnEunknown
    yfnFunknown
    yfnGunknown
    yfnHunknown
    yhaL[category|SW 4.2|Sporulation]
    yhbH[category|SW 4.2|Sporulation]
    yhcMunknown
    yhcOunknown
    yhcQunknown
    yhcVunknown
    yhfMunknown
    yhfWunknown
    yhxCunknown
    yisZsulfate reduction and activation
    yitAsulfate reduction and activation
    yitBsulfate reduction and activation
    yitCunknown
    yitDbiosynthesis of L-sulfolactate
    yitFunknown
    yitGunknown
    yjaV[category|SW 4.2|Sporulation]
    yjbAunknown
    yjcAunknown
    yjfAunknown
    yjmCunknown
    yjmDutilization of dulcitol
    yjmFunknown
    ykoVnon-homologous end joining DNA repair, repair of gapped DNA substrates
    ykvIunknown
    ykvQunknown
    ylbBunknown
    ylbCunknown
    ylbEunknown
    ylmCunknown
    ylxWunknown
    ylxXunknown
    ylyAcontrol of [protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG]-dependent [SW|transcription]
    ymxHunknown
    yndAunknown
    yngEmother cell metabolism, leucine utilization
    yngFmother cell metabolism, leucine utilization
    yngGmother cell metabolism, leucine utilization
    yngHmother cell metabolism, leucine utilization
    yngHBmother cell metabolism, leucine utilization
    yngImother cell metabolism, leucine utilization
    yngJmother cell metabolism, leucine utilization
    yoaRunknown
    yoaWunknown
    yobWunknown
    yocLunknown
    yodHunknown
    yodPunknown
    yodQunknown
    yodRunknown
    yodSunknown
    yodTunknown
    yokUunknown
    yozQunknown
    ypfBunknown
    yphAunknown
    ypjBunknown
    ypqAunknown
    ypzAunknown
    yqcKunknown
    yqfCunknown
    yqfDsporulation
    yqfQunknown
    yqfUunknown
    yqfXunknown
    yqfZunknown
    yqhGunknown
    yqhHunknown
    yqhPunknown
    yqhQsurvival of stress conditions
    yqjCunknown
    yqxAunknown
    yqzGunknown
    yrkCunknown
    yrrDunknown
    yrrSunknown
    ytcClipopolysaccharide biosynthesis
    yteAunknown
    yteVunknown
    ytfIunknown
    ytlAunknown
    ytlCunknown
    ytlDunknown
    ytrHunknown
    ytrIspore cortex formation
    ytvIunknown
    ytxCunknown
    yuiCunknown
    yurSunknown
    yusNunknown
    yuzAunknown
    yveAunknown
    ywcAunknown
    ywcBunknown
    ywjDprotection of developing and dormant spores against UV DNA damage
    ywjEphospholipid biosynthesis
    ywnJunknown
    ywrJunknown
    yxeDunknown
    yxjF3-hydroxybutyrate utilization
    yyaCunknown
    yyaDunknown

    4.2.1.5. Newly identified sporulation proteins (based on transcription profiling)

    NameFunction
    citHcitrate uptake
    lplDutilization of pectin
    nrnBdegradation of RNA oligonucleotides
    yaaCunknown
    yabSunknown
    ybbCunknown
    ybeFunknown
    ybfJunknown
    ycgHunknown
    ycgIunknown
    ycgLunknown
    ydzHunknown
    ydzRunknown
    yetFunknown
    yetOfatty acid metabolism
    yezFunknown
    yfhSunknown
    yflJunknown
    yflNunknown
    yfmAunknown
    ygzAunknown
    ygzCunknown
    yhcTRNA modification
    yhdBunknown
    yhdCunknown
    yheFunknown
    yhfAunknown
    yhfNunknown
    yhjQprevention of copper toxicity
    yhzFunknown
    yisNunknown
    yitEunknown
    yitQunknown
    yizCunknown
    yjaZunknown
    yjbEunknown
    yjnAunknown
    yjzKunknown
    ykjAunknown
    ykoNunknown
    ykoPunknown
    ykoQunknown
    ykoSunknown
    ykoYunknown
    ykpCunknown
    ykuSunknown
    ykwBunknown
    ykzDunknown
    ykzEunknown
    ykzHunknown
    ykzVunknown
    ymaFunknown
    ymfJunknown
    yncEunknown
    yndMunknown
    ynfEunknown
    yngKunknown
    yngLunknown
    yoaIunknown
    yoaMunknown
    yoaQunknown
    yodLcontrol of cell division
    yodNunknown
    yodUspore envelope polysaccharide biosynthesis
    yojBunknown
    yozDunknown
    yozEunknown
    yozFunknown
    yozNunknown
    ypeQunknown
    yppCunknown
    yppDunknown
    ypqPspore envelope polysaccharide biosynthesis
    yptAunknown
    ypzCunknown
    yqeCunknown
    yqgEunknown
    yqgOunknown
    yqhOunknown
    yqhRunknown
    yqhVunknown
    yqjBunknown
    yrbDuptake of alanine
    yrbGunknown
    yrrImay control [SW|cell wall synthesis ]by the [SW|penicillin-binding proteins]
    yrzAunknown
    yrzEunknown
    yrzKunknown
    yrzQunknown
    yrzRunknown
    yteTunknown
    ytvBunknown
    ytwIunknown
    ytzCunknown
    ytzHunknown
    yueGunknown
    yufSunknown
    yugFunknown
    yumBunknown
    yunCunknown
    yurZunknown
    yusWunknown
    yutCunknown
    yutGunknown
    yuzEunknown
    yuzFunknown
    yuzIunknown
    yvaCunknown
    ywaFunknown
    ywbAunknown
    ywbBunknown
    ywkFunknown
    ywmAunknown
    ywnGunknown
    ywoCunknown
    ywoDunknown
    ywqIunknown
    ywqJunknown
    ywqKunknown
    ywqLDNA repair
    ywrKunknown
    yyaLunknown
    yybPunknown
    yycEunknown
    yycNunknown
    yycOunknown
    yycPunknown
    yycQunknown
    yyzBunknown

    important web site

    description

  • [http://sporeweb.molgenrug.nl/ SporeWeb] is a dynamic web-based platform describing all stages of sporulation in B. subtilis from a gene regulatory point of view. The website is intended for all microbial researches interested in bacterial sporulation and/or gene regulatory networks and contains useful information for both sporulation experts and non-experts.
  • you can find

  • detailed review-like descriptions of all sporulation stages,
  • schematic representations of regulatory events during every stage,
  • links to specific regulators and their regulons,
  • access to detailed Excel sheets of all sporulation-specific regulons,
  • Cytoscape-generated layouts of regulon interactions during a specific stage,
  • a tool to generate your own Cytoscape interaction figure for specific genes of interest,
  • heat maps showing expression values of all sporulation genes during the sporulation cycle (derived from [pubmed|22383849]),
  • direct links to other knowledge platforms, such as SubtiWiki,
  • an extensive list of references for further detailed information.
  • important reviews

  • 22091839,20833318,16045607,15819616,15659154,15556029,15187183,15035041,2257467,22882546,24983526,25646759
  • important original publications

  • 21667307,21665972,21905219,23284278,25341802,25356555,25548246,26735940,29425492