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Category: Transcription factors and their control
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Category: Transcription factors and their control

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3. Information processing

3.4. Regulation of gene expression

3.4.2. Transcription factors and their control

3.4.2.1. Two-component system response regulators

NameFunction
bceRresistance against toxic peptides
cheYmodulation of flagellar switch bias
citTregulation of citrate uptake
comAregulation of genetic competence and quorum sensing
cssRcontrol of cellular responses to protein secretion stress
dctRregulation of the [gene|9A96572B101358768EB20EE9438BE0E1424A4130|dctS]-[gene|97C34F6FA0B89D93369150E9A8AB3579332B07BC|dctR]-[gene|search|dctP ]operon
degUregulation of degradative enzymes, [SW|genetic competence], and other adaptive responses
desRregulation of cold shock expression of [gene|644C0C354B72FC07222EE45F4D2E0E57434B5EB5|des]
glnLregulation of the glsA-glnT operon
liaRregulation of the [gene|B6D1159454969D1D578E05D5CE2259E079688510|liaI]-[gene|AE4BF12C368468C553EED7A696D5EFC63F56CA39|liaH]-[gene|A71B0392FFF70EFFC096E7E9BD5FE30792821CDD|liaG]-[gene|C107A958DFA2B0DA4837E2F9F648CD329A3116AC|liaF]-[gene|9A1871BD853254EEA8B4E78CA187F9315CBDF43D|liaS]-[gene|search|liaR ]operon
lnrKresistance to linearmycin
lytTcontrol of pyruvate utilization
malRregulation of malate uptake
natRregulation of the [gene|B019FD0CB6F76C03DA5E76ABD1B324BA5E1A6936|natA]-[gene|search|natB ]operon
phoPregulation of phosphate metabolism ([gene|E0430C16C41440633647976A0F9183E24268E198|phoA], [gene|3B95AB3021280215B6B487A348D78FB5797AEEA6|phoB], [gene|597771E2E8EC31ED9B2CC8C0E4D888DEEA80F689|phoD], [gene|F7D869F77E2275110737EF658C58FA1BF742D73F|resABCDE], [gene|72A89412C53703F96F835D26307263F5D1A4AB4E|tagA]-[gene|911A4D957A6C0DFC636A152395119DBFC777DDA2|tagB], [gene|8620DA76A1953D7ACDFA7E46ED81EF1A0D97999C|tagDEF], [[gene|tuaA|tuaA-H]])
psdRresistance against toxic peptides
resDregulation of aerobic and anaerobic respiration
spo0Ainitiation of [SW|sporulation]
walRcontrol of cell wall metabolism
ybdJunknown
ycbLunknown
yclJunknown
ydfIcontrol of [gene|search|ydfJ ]expression
yesNunknown
yhcZunknown
ykoGunknown
yneIunknown
yrkPunknown
yvfUunknown
yvrHbregulation cell surface maintenance
yxdJresistance against toxic peptides
yxjLunknown

3.4.2.2. Control of two-component response regulators

3.4.2.3. PRD-type regulators

NameFunction
glcTcontrol of glucose uptake
levRregulation of levan and fructose utilization
licRregulation of lichenan utilization
licTcontrol of beta-glucan and beta-glucoside utilization
manRregulation of mannose utilization
mtlRregulation of mannitol utilization
sacTregulation of sucrose utilization
sacYregulation of sucrose utilization

3.4.2.4. Control of PRD-type regulators

NameFunction
bglPbeta-glucoside uptake and phosphorylation, control of [protein|search|LicT ]activity
levEfructose uptake and phosphorylation, control of [protein|1D2043CC0D8CF64142F0A5993A936C5A196726D4|LevR] activity
licBlichenan uptake and phosphorylation, control of LicR activity
manPmannose uptake and phosphorylation, control of [protein|F273002AF97D87BB025B4F014C328C5592EAD621|ManR] activity
mtlAmannitol uptake and phosphorylation, control of [protein|1CEDC98C9EDD8F3DEA0AF4B2104DA1BF86E688C2|MtlR] activity
ptsGglucose transport and phosphorylation, control of [protein|BC0DF593AE969F1DBC5E9E2BACF1C00BE4FEE449|GlcT] activity
sacPsucrose uptake and phosphorylation, control of [protein|6796E1C147AA21E919A42A953884DC24E182F430|SacT] activity
sacXsucrose uptake and phosphorylation, control of [protein|EB330AB3DC6C8C3EC72C4CAFA2BC59CC485EE344|SacY] activity

3.4.2.5. Transcription factors/ other

NameFunction
acoRregulation of acetoin utilization
adaAadaptive response to alkylative DNA damage
adeRcontrol of ald expression
adhRregulation of the protective response to formaldehyde and methylglyoxal
ahrCtranscriptional regulator of arginine metabolic genes
alaRunknown
alsRregulation of acetoin synthesis ([gene|AAA45830B9C5428CADFA5551D33B513E9B1B7C8E|alsS]-[gene|355E70F55A28C6C2C24E8E326EFB673AC303FBEE|alsD])
ansRnegative regulation of the [gene|FED8E46AA1C4EFD27796D5DFBBB1663EBF336BFD|ansA]-[gene|search|ansB ]operon
araRregulation of arabinose utilization
arfMregulation of anaerobic genes
arsRregulation of As (III) efflux
ascRregulation of sulphur metabolism
aseRregulation of As (III) efflux
azlBregulation of branched-chain amino acid transport
birAregulation of biotin synthesis, addition of biotin to proteins
bkdRregulation of branched-chain amino acid utilization,
bltRregulation of spermidine efflux and degradation
bmrRregulation of multidrug resistance
bsdAregulation of resistance to salicylic acid
btrregulation of iron acquisition
catRresistance against oxidative and electrophile stress
ccpAcarbon catabolite repression (CCR)
ccpBunknown
ccpCregulation of tricarboxylic acid branch of the TCA cycle
ccpNrepressor of genes involved in gluconeogenesis ([gene|C1B89BD3DD27CD566018558D3A7845FB451056F0|gapB], [gene|74D4616D1A550D87182FAAC2A4AF6E04F81E1572|pckA]) and of [gene|FC93BA60BD185DE5EF31D5605F0B8294EC2E8E5A|sr1]
cggRtranscriptional regulator
chrSregulation of chromate export
citRregulation of the minor citrate synthase
codYregulation of a large regulon in response to branched-chain amino acid limitation
comKregulation of [SW|genetic competence] and DNA uptake
csoRcontrol of copper homeostasis
ctsRregulation of protein degradation
cueRregulation of the copZ-copA operon
cymRregulation of sulfur metabolism
cysLregulation of cysteine biosynthesis
czrAregulation of resistance against toxic metal cations
deoRregulation of deoxyribonucleotide utilization
dtrRresistance to D-Tyr
exuRregulation of hexuronate utilization
fadRregulation of fatty acid degradation
fapRregulation of fatty acid biosynthesis
fatRunknown
fnrregulation of anaerobiosis, fermentation and overflow metabolism
frlRregulation of utilization of sugar amines
fruRregulation of fructose utilization
furregulation of iron homoeostasis
gabRregulation of gamma-amino butyric acid utilization
gamRregulation of glucosamine utilization
ganRregulation of galactan utilization
gbsRregulation of osmoprotection
gerEregulation of [protein|search|SigK]-dependent gene expression
gerRspore coat formation and resistance of spores to lysozyme
glcRunknown
glnRregulation of glutamine synthesis
glpPregulation of glycerol and glycerol-3-phosphate utilization
gltCpositive regulation of the glutamate synthase operon ([gene|44DF1B7E476AD58B3CCC39300FFE0132D0D32AD0|gltA]-[gene|AA07CC52B2DD48ACC9D3375E9D531CB1ACBE485A|gltB])
gltRunknown
glvRregulation of maltose utilization
gmuRregulation of glucomannan utilization
gntRregulation of gluconate utilization
gutRregulation of glucitol utilization
hprTpurine salvage and interconversion, control of ftsH expression
hrcAregulation of chaperone gene expression
hutPregulation of histidine utilization
hxlRregulation of the ribulose monophosphate pathway
hypRcontrol of the nitroreductase gene [gene|9DF5999568760E016ECA988385A1FA61A257D486|hypO] in response to disulfide stress (diamide, NaOCl)
immRcontrol of transfer of the mobile genetic element ICEBs1
iolQcontrol of scyllo-inositol utilization
iolRregulation of myo-inositol catabolism
kdgRregulation of galacturonic acid utilization
kipRregulation of [SW|sporulation] initiation
lexAregulation of DNA damage repair
lmrAregulation of lincomycin resistance
lrpArepression of [gene|BAE8062DA8538C9C83FFBA9684BECE9613EEFD2F|glyA] transcription and [protein|2111AC1AE49D1006E10DC127BF5B7A0327DE94A7|KinB]-dependent [SW|sporulation]
lrpBrepression of [gene|BAE8062DA8538C9C83FFBA9684BECE9613EEFD2F|glyA] transcription and [protein|2111AC1AE49D1006E10DC127BF5B7A0327DE94A7|KinB]-dependent [SW|sporulation]
lutRcontrol of lactate utilization
mdtRregulation of the multidrug-resistance [gene|795D70E8A4D750140D6B1AA4BFEBD25C2A389C85|mdtR]-[gene|search|mdtP ]operon
mgsRcontrols a subset of general stress genes
mhqRregulation of resistance to quinones and diamide
mntRregulation of manganese transport
msmRregulation of melibiose utilization
mtaregulation of multidrug-efflux transporter genes
mtrBregulation of tryptophan biosynthesis(and translation) attenuation in the trp operon;repression of the folate operon
murRregulation of muramic acid utilization
nadRregulation of NAD biosynthesis
nagRregulator of the nagA-nagB-nagR operon
nrdRcontrol of ribonucleotide reductase expression
nsrRrepression of ResD-ResE-dependent genes in the absence of nitric oxide (NO)
ntdRregulation of the [gene|2F850E2DFA6287DB3890243803E06FDE7ACDB10E|ntdA]-[gene|A4DE6C394B64813A732255734758403241FFAC2F|ntdB]-[gene|29DAF5343A42EAD8DB97925FE7D049410F7B7FCA|ntdC]-[gene|search|glcP ]operon
ohrRregulation of ohrA expression in response to organic peroxides
opcRregulation of choline uptake
padRregulation of the phenolic acid stress response
paiBregulation of sporulation, degradative enzyme and motility genes
pamRcontrol of the [gene|20D50DA11B864E6C719CC34BE27C7900893EA054|ydcF]-[gene|89AB146F447696EF1CBE219C9A2FB5CBB380F847|ydcG]-[gene|search|pamR ]operon
perRregulation of the response to peroxide
pksAunknown
pucRregulation of purine utilization
purRregulation of purine biosynthesis
putRregulation of proline utilization
pyrRregulation of pyrimidine biosynthesis
qdoRcontrol of quercetin utilization
rbsRregulation of ribose utilization
remAcontrol of biofilm formation
rexregulation of fermentation and anaerobic respiration
rghRregulation of [SW|sporulation ]initiation
rhaRcontrol of rhamnose utilization
rhgRregulation of pectin utilization
rocRtranscriptional activator of arginine utilization operons
rokregulation of genetic competence
scoCtransition state regulator
sdpRregulation of protection against [protein|820635420B3980B620F3E3D7ACF7EDE9DC6275AD|SdpC]
senSregulation of extracellular enzyme genes
sinRcontrol of [SW|biofilm formation]
sknRcontrol of prophage gene expression
slrRregulation of initiation of [SW|biofilm formation] and of autolysis
splAregulation of the splA-splB operon
spoIIIDregulation of mother cell gene expression
spoVTregulation of forespore gene expression
spxnegative and positive regulator of many genes
thrRcontrol of threonine biosynthesis
tilStRNA modification, control of ftsH expression
tnrAregulation of nitrogen assimilation
treRregulation of trehalose utilization
xreregulation of PBSX prophage gene expression
xylRregulation of xylan and xylose utilization
ycbGregulation of glucarate/galactarate utilization
ycnKregulation of copper uptake
yetLregulation of [gene|A70EA4AEBF46ED2279E8BCE8A28439078484B6E3|yetM] expression
yfmPregulation of the [gene|36AF02B4EB416ABCA3F0E4C5A4126E777A20C7D1|yfmP]-[gene|D91356CF66ADE0CFA9E95A686DC7355B348C8B5C|yfmO] operon
ykrKregulation of membrane protein quality control
yodBregulation of quinone and diamide detoxification
yofAcontrol of ftsW expression
yplPrequired for survival at low temperatures
ytrAcontrol of cell envelope stress responses
ywcCcontrol of SlrA expression
zurregulation of zinc homeostasis([gene|75DB07A2704FEC2932BD0CDD24E2B3454E9551E1|yciC], [gene|D33A144568CAF32FFE4A2A46BE67573DB66FC1A1|znuA]-[gene|6B5D4FD32CCE72C99B915B0F1EB4B8E8D42A04B3|znuC]-[gene|EE212953BC83BD6D69BF769D6E917F4F954BE1E2|znuB])

3.4.2.6. Transcription factor/ other/ based on similarity

NameFunction
rmgRunknown
whiAcontrol of Z ring asembly and chromosome segregation
yazBunknown
ybfIunknown
ybfPunknown
ybzHunknown
yceKunknown
ycgEunknown
ycgKunknown
ycnCunknown
ycxDunknown
yczGunknown
ydeBunknown
ydeCunknown
ydeEunknown
ydeFunknown
ydeLunknown
ydePunknown
ydeSunknown
ydfDunknown
ydfFunknown
ydfLunknown
ydgCunknown
ydgGunknown
ydgJunknown
ydhCunknown
yerCunknown
yerOunknown
yezCunknown
yezEunknown
yfiFunknown
yfiRcontrol of [gene|search|yfiS ]expression
yfiVunknown
ygzDunknown
yhbIunknown
yhcBunknown
yhcFunknown
yhdIunknown
yhgDunknown
yhjHunknown
yisRunknown
yisVunknown
ykoMunknown
ykvNunknown
ykvZunknown
ymfCunknown
yoaUunknown
yobDunknown
yobQunknown
yobSunknown
yonRunknown
yopOunknown
yopSunknown
yotLunknown
yozGunknown
ypoPunknown
yqaFunknown
yqaGunknown
yraNunknown
yrdQunknown
ysfBunknown
ysmBunknown
ytcDunknown
ytoIunknown
ytzEunknown
yusTunknown
yuzNunknown
yvaOunknown
yvaVunknown
yvbUunknown
yvdEprobably regulation of starch and maltodextrin utilization
yvdTunknown
yvkBunknown
yvzCunknown
ywbIcontrol of expression of the ywbH-ywbG operon
ywhAunknown
ywoHunknown
ywqMunknown
yxaDunknown
yxjOunknown
yyaNunknown
yybAunknown
yybEunknown
yydKunknown

3.4.2.7. Control of transcription factor (other than two-component system)

NameFunction
abbAinhibition of AbrB
crhcontrol of carbon flux
cysKbiosynthesis of cysteine, control of [protein|50930C56C27D22715620A350220E3C56ADB41020|CymR] activity
glnAglutamine biosynthesis, control of [protein|857EF1AC54DEA0690C01B7F8CEFFD16312C58F20|TnrA] and [protein|641C4BDD9702804642E1753A9C779E80FABB3919|GlnR] activity
gudBglutamate utilization, control of [protein|87BCAE725B02860156D50E1783F6DB68510C811E|GltC] activity
hprKcarbon catabolite repression,phosphorylation of [protein|29B793660E4D30C0656248F3EF403FEF76FB9025|HPr] and [protein|A269774F2FDC94F93BA5F1360FFFE754B50383AD|Crh] proteins at Ser46
hprTpurine salvage and interconversion, control of ftsH expression
immAcontrol of [protein|DD1C8F3A4809785BD6A6047D39B42AB2C605E161|ImmR] activity
mcsAcontrol of [protein|908DB17A39D518E84977250C55825E77FA02E391|CtsR] activity
mcsBcontrol of [protein|908DB17A39D518E84977250C55825E77FA02E391|CtsR] activity
nrgBregulation of ammonium uptake
phrIcontrol of the transfer of the mobile genetic element ICEBs1
ptsHPTS-dependent sugar transport and carbon catabolite repression
rapIcontrol of transfer of the mobile genetic element ICEBs1
rocGarginine utilization, controls the activity of [protein|87BCAE725B02860156D50E1783F6DB68510C811E|GltC]
rtpAregulation of tryptophan biosynthesis
salAcontrol of alkaline protease expression
sinIcontrol of [SW|biofilm formation]
slrAcontrol of motility and biofilm formation
tilStRNA modification, control of ftsH expression
ylbFcontrol of [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y] activity, see [SW|Targets of the Y complex]
ymcAcontrol of [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y] activity, see [SW|Targets of the Y complex]
yqfLinhibits [protein|2234D81F8F9B92EAF1CF6F73BEC92D4DE54E2636|CcpN] activity

reviews on transcription regulation

  • 19721087,19632156,16772031,18599813,22210308,23504016,22728391