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Category: Translation
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Category: Translation

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3. Information processing

3.3. Protein synthesis, modification and degradation

3.3.1. Translation

3.3.1.1. Ribosomal RNA

NameFunction
rrnA-16Stranslation
rrnA-23Stranslation
rrnA-5Stranslation
rrnB-16Stranslation
rrnB-23Stranslation
rrnB-5Stranslation
rrnD-16Stranslation
rrnD-23Stranslation
rrnD-5Stranslation
rrnE-16Stranslation
rrnE-23Stranslation
rrnE-5Stranslation
rrnG-16Stranslation
rrnG-23Stranslation
rrnG-5Stranslation
rrnH-16Stranslation
rrnH-23Stranslation
rrnH-5Stranslation
rrnI-16Stranslation
rrnI-23Stranslation
rrnI-5Stranslation
rrnJ-16Stranslation
rrnJ-23Stranslation
rrnJ-5Stranslation
rrnO-16Stranslation
rrnO-23Stranslation
rrnO-5Stranslation
rrnW-16Stranslation
rrnW-23Stranslation
rrnW-5Stranslation

important publications

  • 20634236,23970567
  • 3.3.1.2. rRNA modification and maturation

    NameFunction
    gidBrRNA modification
    ksgArRNA maturation
    mrnCmaturation of 23S rRNA
    rimMmaturation of 16S rRNA
    rlmCD23S rRNA maturation
    rluB23S rRNA modification
    rncprocessing and degradation of RNA molecules
    rnmV5S ribosomal RNA maturation
    yacOunknown
    ypuItranslation
    yqfG16S rRNA maturation
    ysgAunknown

    3.3.1.3. rRNA modification and maturation/ based on similarity

    NameFunction
    yabCrRNA modification
    yhcTRNA modification
    yjbORNA modification
    ylbHunknown
    yloMrRNA modification
    yloNrRNA modification
    ylyBRNA modification
    ypsCrRNA modification
    yqxCunknown
    yrrK16S rRNA maturation
    ytzG16S rRNA modification
    yydAmay be involved in maturation of 23S rRNA

    3.3.1.4. Ribosomal proteins

    NameFunction
    ctcunknown
    rplBtranslation
    rplCtranslation
    rplDtranslation
    rplEtranslation
    rplFtranslation
    rplGBunknown
    rplItranslation
    rplJtranslation
    rplKtranslation
    rplLtranslation
    rplMtranslation
    rplNtranslation
    rplOtranslation
    rplPtranslation
    rplQtranslation
    rplRtranslation
    rplStranslation
    rplTtranslation
    rplUtranslation
    rplXtranslation
    rpmAtranslation
    rpmBtranslation
    rpmCtranslation
    rpmDtranslation
    rpmEtranslation
    rpmEBsurvival of salt stress
    rpmFtranslation
    rpmGAtranslation
    rpmGBtranslation
    rpmGCreplaces L33 under conditions of zinc depletion
    rpmHtranslation
    rpmItranslation
    rpmJtranslation
    rpsBtranslation
    rpsCtranslation
    rpsDtranslation
    rpsEtranslation
    rpsFtranslation
    rpsGtranslation
    rpsHtranslation
    rpsItranslation
    rpsJtranslation
    rpsKtranslation
    rpsLtranslation
    rpsMtranslation
    rpsNtranslation
    rpsNBtranslation
    rpsOtranslation
    rpsPtranslation
    rpsQtranslation
    rpsRtranslation
    rpsStranslation
    rpsTtranslation
    rpsUtranslation

    3.3.1.5. Ribosomal protein/ based on similarity

    NameFunction
    yfjLunknown
    ylxQunknown
    ypfDunknown

    3.3.1.6. Ribosome assembly

    NameFunction
    cpgAribosome assembly, coordination of peptidoglycan deposition in the cell wall
    cshARNA helicase
    cshBRNA helicase
    eraribosome assembly
    obgribosome assembly, may be required to stimulate activity
    prpmaturation of [protein|4626C659D6F1A81CCC94030F1CBAF7FEC3DE19CA|ribosomal protein L27]
    rbgAribosome assembly
    yaaAassembly of the 50S subunit of the ribosome
    yfmLRNA helicase
    yphCribosome assembly
    yqeHribosome assembly
    ysxCribosome assembly

    3.3.1.7. tRNA

    NameFunction
    trnA-Alatranslation
    trnA-Iletranslation
    trnB-Alatranslation
    trnB-Argtranslation
    trnB-Asntranslation
    trnB-Asptranslation
    trnB-Glutranslation
    trnB-Gly1translation
    trnB-Gly2translation
    trnB-Histranslation
    trnB-Ile2translation
    trnB-Leu1translation
    trnB-Leu2translation
    trnB-Lystranslation
    trnB-Met1translation
    trnB-Met2translation
    trnB-Met3translation
    trnB-Phetranslation
    trnB-Protranslation
    trnB-Ser1translation
    trnB-Ser2translation
    trnB-Thrtranslation
    trnB-Valtranslation
    trnD-Asntranslation
    trnD-Asptranslation
    trnD-Cystranslation
    trnD-Glntranslation
    trnD-Glutranslation
    trnD-Glytranslation
    trnD-Histranslation
    trnD-Leu1translation
    trnD-Leu2translation
    trnD-Mettranslation
    trnD-Phetranslation
    trnD-Sertranslation
    trnD-Thrtranslation
    trnD-Trptranslation
    trnD-Tyrtranslation
    trnD-Valtranslation
    trnE-Argtranslation
    trnE-Asptranslation
    trnE-Glytranslation
    trnE-Mettranslation
    trnI-Alatranslation
    trnI-Argtranslation
    trnI-Asntranslation
    trnI-Glytranslation
    trnI-Protranslation
    trnI-Thrtranslation
    trnJ-Alatranslation
    trnJ-Argtranslation
    trnJ-Glytranslation
    trnJ-Leu1translation
    trnJ-Leu2translation
    trnJ-Lystranslation
    trnJ-Protranslation
    trnJ-Thrtranslation
    trnJ-Valtranslation
    trnO-Alatranslation
    trnO-Iletranslation
    trnQ-Argtranslation
    trnS-Asntranslation
    trnS-Glntranslation
    trnS-Glutranslation
    trnS-Leu1translation
    trnS-Leu2translation
    trnS-Lystranslation
    trnS-Sertranslation
    trnSL-Ala1translation
    trnSL-Arg1translation
    trnSL-Arg2translation
    trnSL-Gln1translation
    trnSL-Gln2translation
    trnSL-Glu1translation
    trnSL-Glu2translation
    trnSL-Gly1translation
    trnSL-Met1translation
    trnSL-Ser1translation
    trnSL-Thr1translation
    trnSL-Tyr1translation
    trnSL-Val1translation
    trnSL-Val2translation
    trnY-Asptranslation
    trnY-Glutranslation
    trnY-Lystranslation
    trnY-Phetranslation

    important publications

  • 25796611,25780175,24966867
  • 3.3.1.8. tRNA modification and maturation

    NameFunction
    ccatRNA modification
    cspRtranslation
    fmtformylation of Met-tRNA(fMet)
    folDformylation of Met-tRNA(fMet)
    gidAtRNA modification
    miaAtRNA modification
    nifZbiosynthesis of 4-thiouridine in tRNA
    queAtRNA modification
    queCtRNA modification
    queDtRNA modification
    queEtRNA modification
    queFtRNA modification
    queGsynthesis of queuosine, tRNA modification
    rnpAcleavage of precursor sequences from the 5 ends of pre-tRNAs
    rnpBcleavage of precursor sequences from the 5 ends of pre-tRNAs
    rnzprocessing of CCA-less tRNA precursors
    rph3-5 exoribonuclease
    tgttRNA modification
    thdFtRNA modification
    thiIbiosynthesis of 4-thiouridine in tRNA
    tilStRNA modification, control of ftsH expression
    trmBtRNA modification
    trmDtRNA modification
    trmFOtRNA modification
    trmKtRNA modification
    trmRintroduction of 5-methoxyuridine modification in tRNA
    trmUtRNA modification
    truAtRNA modification
    truBtRNA modification
    tsaBtRNA modification
    tsaCtRNA modification
    tsaDtRNA modification
    tsaEcontrol of tRNA modification
    yaaJtRNA modification
    yacFtRNA maturation
    yfjNtRNA modification
    ymcBtRNA maturation
    yqeVtRNA maturation
    yrvMtRNA modification
    yrvOtRNA modification

    3.3.1.9. tRNA modification and maturation/ based on similarity

    NameFunction
    yjdImaturation of tRNA

    3.3.1.10. Aminoacyl-tRNA synthetases

    NameFunction
    alaStranslation
    argStranslation
    asnStranslation
    aspStranslation
    cysStranslation
    gatAtranslation
    gatBtranslation
    gatCtranslation
    gltXtranslation
    glyQtranslation
    glyStranslation
    hisStranslation
    hisZtranslation
    ileStranslation
    leuStranslation
    lysStranslation
    metStranslation
    pheStranslation
    pheTtranslation
    proStranslation
    serStranslation
    thrStranslation
    thrZtranslation
    trpStranslation
    tyrStranslation
    tyrZtranslation
    valStranslation
    ytpRunknown

    3.3.1.11. Translation factors

    NameFunction
    efp[category|SW 3.3.1|Translation]
    frrtranslation
    fusAtranslation
    infAtranslation
    infBtranslation
    infCtranslation
    prfAtranslation
    prfBtranslation
    rbfAtranslation
    tsftranslation
    tufAtranslation
    ylaGunknown

    3.3.1.12. Translation/ other

    NameFunction
    deaDRNA helicase
    defAtranslation
    dtdprevention of misincorporation of D-amino acids into proteins
    mapremoval of N-terminal methionine from nascent proteins
    mifMcontrol of yidC2 translation
    smpBtrans-translation
    spoVCspore coat formation
    ssrAtrans-translation
    yflGremoval of N-terminal methionine from nascent proteins
    yqeLtranslation
    yqeTunknown

    3.3.1.13. Translation/ other/ based on similarity

    NameFunction
    yabOrecycling of stalled ribosomes
    ydiDunknown
    yfjOunknown
    yjcKunknown
    ylxSribosome maturation
    ynaDunknown
    yoaAunknown
    yqeIunknown
    ywkEpeptide release factor methylation

    3.3.1.14. Translation factor modification and maturation

    NameFunction
    gsaBbiosynthesis of heme, modification of [protein|3054CD45713BBD69C2A528DE24AF6AF37175FD9D|Efp]
    yaaOcontrol of [protein|3054CD45713BBD69C2A528DE24AF6AF37175FD9D|Efp] modification
    yfkAcontrol of [protein|3054CD45713BBD69C2A528DE24AF6AF37175FD9D|Efp] modification
    ymfImodification of [protein|3054CD45713BBD69C2A528DE24AF6AF37175FD9D|Efp]
    ynbBmodification of [protein|3054CD45713BBD69C2A528DE24AF6AF37175FD9D|Efp]
    ywlGcontrol of [protein|3054CD45713BBD69C2A528DE24AF6AF37175FD9D|Efp] modification

    important publications

  • 22456704,22848659,22905870,2,809820,24789973,25796611,26518335