yqiK
168
cytoplasmic glycerophosphodiester phosphodiesterase
locus
BSU_24180
Molecular weight
26.81 kDa
pI
6.43
function
unknown
product
cytoplasmic glycerophosphodiester phosphodiesterase
essential
no
synonyms
yqiK
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG0584 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
2,514,169 → 2,514,900
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The protein
[wiki|Domains]
GP-PDE domain (aa 2-240) (according to UniProt)
Structure
[PDB|2PZ0] (GdpP from Thermoanaerobacter tengcongensis, 43% identity) [pubmed|18214974]
[AF|P54527]
Paralogous protein(s)
[protein|E9BEF368F8E55888AD4849E8906E517831A882DF|glpQ], [protein|04CACAF4F786090AB67D7C606C944F07B7A7FE55|yhdW]
[wiki|Localization]
cytoplasm (according to Swiss-Prot)
Expression and Regulation
Operons
genes
[gene|AEA18C431FE13FC34671E673DC6733B200E342A8|yqiH]-[gene|0AD75864794E597AA9160969ADE6FE0C7ED07B9F|yqiI]-[gene|AF37A0E08AAAA9159DD1F0183A61713EF582E830|yqiK]
description
[Pubmed|22843846,22383849]
regulation
only expressed under conditions of high osmolarity [Pubmed|22843846]
sigma factors
[protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA]: sigma factor, [Pubmed|22843846], in [regulon|protein:360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA regulon]
genes
[gene|AF37A0E08AAAA9159DD1F0183A61713EF582E830|yqiK]
description
[Pubmed|22383849]
Biological materials
Mutant
GP2384 ∆''[gene|AF37A0E08AAAA9159DD1F0183A61713EF582E830|yqiK]''::''cat'', available in [wiki|Jörg Stülke]'s lab
MGNA-C458 (yqiK::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2456 NBRP B. subtilis, Japan]
BKE24180 (Δ''[gene|AF37A0E08AAAA9159DD1F0183A61713EF582E830|yqiK]''::''ermC'') (available in the BGSC and in [wiki|Jörg Stülke]'s lab) [pubmed|28189581]
BKE24180 (Δ[gene|AF37A0E08AAAA9159DD1F0183A61713EF582E830|yqiK]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE24180 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCGTTTCACCTCAAACCC, downstream forward: _UP4_TAGTTGTTAGAAGGAGGCTG
BKK24180 (Δ[gene|AF37A0E08AAAA9159DD1F0183A61713EF582E830|yqiK]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK24180 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCGTTTCACCTCAAACCC, downstream forward: _UP4_TAGTTGTTAGAAGGAGGCTG
References
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Time of last update: 2024-04-18 22:43:36
Author of last update: Melvin.boenninger