yqiI

yqiI
168

secreted N-acetylmuramoyl-L-alanine amidase

locus
BSU_24190
Molecular weight
22.09 kDa
pI
4.29
Protein length
Gene length
function
cell wall metabolism
product
peptidoglycan hydrolase
essential
no
synonyms
yqiI

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG0860 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
2,514,979  2,515,599
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The protein
Catalyzed reaction/ biological activity
cell wall hydrolysis [Pubmed|22843846]
Protein family
[wiki|N-acetylmuramoyl-L-alanine amidase 3 family] (according to UniProt)
[wiki|Domains]
contains an amidase_3 domain (like [protein|5CDF32B0E78F01C696364555E3F0BC8DF2AA2089|cwlC], [protein|B09FB626274B81F00A4FB42D188E089095343182|cwlD], [protein|6A21293823151C6980BF52B31A4B249A8440F2E1|lytC], [protein|BE34A9CE3AF99E8880FC24E34E5D79A1627260AE|yrvJ])
[wiki|MurNAc-LAA domain] (aa 32-201) (according to UniProt)
Structure
[PDB|4RN7] (from Clostridium difficile, 39% identity)
[AF|P54525]
[wiki|Localization]
secreted (with N-terminal signal sequence for SEC-mediated transport) [Pubmed|22843846]
Expression and Regulation
Operons
genes
[gene|AEA18C431FE13FC34671E673DC6733B200E342A8|yqiH]-[gene|0AD75864794E597AA9160969ADE6FE0C7ED07B9F|yqiI]-[gene|AF37A0E08AAAA9159DD1F0183A61713EF582E830|yqiK]
description
[Pubmed|22843846,22383849]
regulation
only expressed under conditions of high osmolarity [Pubmed|22843846]
sigma factors
[protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA]: sigma factor, [Pubmed|22843846], in [regulon|protein:360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA regulon]
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[gene|AEA18C431FE13FC34671E673DC6733B200E342A8|yqiH]→[gene|AF37A0E08AAAA9159DD1F0183A61713EF582E830|yqiK]

2024-03-28 07:09:27

ghost

47

dfc8f921540c68db596917ebf19e3c6fe72d5012

DD64FDA1C9AF483BBCCCABF5F51B1A9B5C8C2C4E

Biological materials
Mutant
MGNA-C372 (yqiI::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2370 NBRP B. subtilis, Japan]
BKE24190 ([gene|0AD75864794E597AA9160969ADE6FE0C7ED07B9F|yqiI]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE24190 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATTCTCAACTTACTCCCTC,  downstream forward: _UP4_TAGATTGATACAGCCTTAAT
BKK24190 ([gene|0AD75864794E597AA9160969ADE6FE0C7ED07B9F|yqiI]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK24190 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATTCTCAACTTACTCCCTC,  downstream forward: _UP4_TAGATTGATACAGCCTTAAT
References
22383849,22843846,32419322

0AD75864794E597AA9160969ADE6FE0C7ED07B9F

Page visits: 1694

Time of last update: 2024-03-27 10:26:58

Author of last update: Jstuelk