yloC

yloC
168

endoribonuclease

locus
BSU_15660
Molecular weight
33.48 kDa
pI
4.87
Protein length
Gene length
function
unknown
product
endoribonuclease YloC
essential
no
synonyms
yloC

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG1561 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
1,640,720  1,641,595
Visit Sartorius.com Visit Sartorius.com
Advertisement
The protein
Catalyzed reaction/ biological activity
cleavage of single-stranded RNA, preferentially at U residues [pubmed|34815358]
Protein family
UPF0701 family (single member, according to UniProt)
[wiki|Cofactors]
Mn2+ [pubmed|34815358]
Structure
[AF|O34441]
Expression and Regulation
Operons
genes
[gene|A57D2C1536F3E93CD687C28C59FF297355CAB303|yloC]-[gene|6AF1CB8998BE9C71DF4F1201A7F74FF7E75CB799|remA]-[gene|1BC994DE60A7BB35DEDD7154581A396D29AA94A7|gmk]-[gene|921933B6B893083F151AABDEDCBC65F2E55677BE|yloH]
description
[pubmed|22383849]
regulation
expressed during vegetative growth and early during sporulation in the forespore ([protein|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|sigF]) [Pubmed|23396918]
sigma factors
[protein|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|sigF]: sigma factor, [Pubmed|23396918], in [regulon|protein:CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|sigF regulon]
Open in new tab

[gene|A57D2C1536F3E93CD687C28C59FF297355CAB303|yloC]->[gene|921933B6B893083F151AABDEDCBC65F2E55677BE|yloH]

2024-03-13 23:00:50

Bzhu

84

b4ed2f235ea58a2cb7be55cafee822b895fe00c8

099190FEE74E539BB75FE227F5793536D7B467E8

genes
[gene|A57D2C1536F3E93CD687C28C59FF297355CAB303|yloC]-[gene|6AF1CB8998BE9C71DF4F1201A7F74FF7E75CB799|remA]-[gene|1BC994DE60A7BB35DEDD7154581A396D29AA94A7|gmk]-[gene|921933B6B893083F151AABDEDCBC65F2E55677BE|yloH]-[gene|2B67C63442F28F6BCBA3BA6DE4B563C73E8DF16C|yloI]-[gene|AF5ADDA2A98EC18BB72A81AA0336E639C0D1F430|priA]-[gene|3D41FB608DB70B9482312A1BBCCDBDA7FB713AFA|defA]-[gene|06971E9AAB033E2878914A76645F99E97CE8A90A|fmt]-[gene|1370D8783450D538C71E3DE8EA5B37DFEE073FF0|yloM]-[gene|5DEBD84E5937DB8B7F29C729FAA0076DF86A5451|yloN]
description
[pubmed|22383849]
Open in new tab

[gene|A57D2C1536F3E93CD687C28C59FF297355CAB303|yloC]->[gene|5DEBD84E5937DB8B7F29C729FAA0076DF86A5451|yloN]

2024-03-28 14:50:08

Jstuelk

94

67080d1e476b4c1544f46abe5db9b45c3ccd93f3

2C39B75EDCD294B0CAC1DECB4007285A35FDAE1D

genes
[gene|7821A09DADC6EAF589A882F05CC34BE900E06F2A|yloB]-[gene|A57D2C1536F3E93CD687C28C59FF297355CAB303|yloC]-[gene|6AF1CB8998BE9C71DF4F1201A7F74FF7E75CB799|remA]-[gene|1BC994DE60A7BB35DEDD7154581A396D29AA94A7|gmk]-[gene|921933B6B893083F151AABDEDCBC65F2E55677BE|yloH]
description
[pubmed|22383849]
regulation
expressed during sporulation in the mother cell [pubmed|12161109]
Open in new tab

[gene|7821A09DADC6EAF589A882F05CC34BE900E06F2A|yloB]->[gene|921933B6B893083F151AABDEDCBC65F2E55677BE|yloH]

2024-03-10 09:03:51

Jstuelk

94

b15c1f28629d3e15db14719be44c291dd5f28c5f

86CE620BD4E14CC259270F542702B302B7837CCD

Biological materials
Mutant
GP2609 (Δ[gene|A57D2C1536F3E93CD687C28C59FF297355CAB303|yloC]::''cat''), available in [wiki|Jörg Stülke]'s lab
MGNA-B131 (yloC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1130 NBRP B. subtilis, Japan]
BKE15660 ([gene|A57D2C1536F3E93CD687C28C59FF297355CAB303|yloC]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE15660 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATTTTAAAACACCCAATTC,  downstream forward: _UP4_TAGTGACTGTGCGTATTGTT
BKK15660 ([gene|A57D2C1536F3E93CD687C28C59FF297355CAB303|yloC]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK15660 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATTTTAAAACACCCAATTC,  downstream forward: _UP4_TAGTGACTGTGCGTATTGTT
References
23396918,34815358

A57D2C1536F3E93CD687C28C59FF297355CAB303

Page visits: 2294

Time of last update: 2024-03-29 04:42:28

Author of last update: Jstuelk