ydeP
168
[wiki|MarR family|MarR/DUF24 family] transcription regulator
locus
BSU_05290
Molecular weight
15.07 kDa
pI
9.4
function
unknown
product
[wiki|MarR family|MarR/DUF24 family] transcription regulator
essential
no
synonyms
ydeP
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG1733 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
575,712 576,098
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The protein
Protein family
[wiki|MarR family|MarR/DUF24 family]
[wiki|Domains]
[wiki|HTH hxlR-type domain] (aa 18-116) (according to UniProt)
Structure
[PDB|4A5M] ([protein|91085DA5E71B88E533D2E1D1BFB53E908116C6AA|hypR], 71% identity) [pubmed|22238377]
[AF|P96673]
Paralogous protein(s)
[protein|73AFDF65BE89C0E2CC59AF2AF64C29BD99D785DF|yodB], [protein|91085DA5E71B88E533D2E1D1BFB53E908116C6AA|hypR], [protein|C57DDC9710CB557179B062F9C5D786DB02A3B5FC|ykvN], [protein|D9A187961CFB9496A6712E9E48AAD384357A3E1C|hxlR], [protein|E757C4B329A99E3D0C70C77437DF4DDA300CA5E7|ydzF], [protein|1E74F0557FF9ECB404B6544831F4E0A162473423|ytcD]
Expression and Regulation
Operons
genes
[gene|51B1913B59C1876CCED4A88414797B3A22BE4E3C|ydeP]
description
[Pubmed|22383849]
Biological materials
Mutant
MGNA-C167 (ydeP::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2165 NBRP B. subtilis, Japan]
BKE05290 ([gene|51B1913B59C1876CCED4A88414797B3A22BE4E3C|ydeP]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE05290 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAGCTGTTCACTCCTAATA, downstream forward: _UP4_TAATAACCAGAAAAAATACC
BKK05290 ([gene|51B1913B59C1876CCED4A88414797B3A22BE4E3C|ydeP]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK05290 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAGCTGTTCACTCCTAATA, downstream forward: _UP4_TAATAACCAGAAAAAATACC
References
Research papers
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Time of last update: 2024-04-17 10:23:01
Author of last update: Melvin.boenninger