xynC

xynC
168

endo-xylanase, preference for methylglucurono-xylan

locus
BSU_18150
Molecular weight
47.17 kDa
pI
9.08
Protein length
Gene length
function
xylan degradation
product
endo-xylanase
essential
no
ec
3.2.1.136
synonyms
xynC, ynfF

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG5520 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
1,942,714  1,943,982
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The protein
Catalyzed reaction/ biological activity
Endohydrolysis of (1->4)-beta-D-xylosyl links in some glucuronoarabinoxylans (according to UniProt)
Protein family
glycosyl hydrolase 30 family (single member, according to UniProt)
Structure
[PDB|3GTN] [Pubmed|19407387,21256135]
[AF|Q45070]
[wiki|Localization]
extracellular (signal peptide) [Pubmed|18957862]
Expression and Regulation
Operons
genes
[gene|8A02D56A403BF2E34B84DF0F44347AA2D091D831|xynD]-[gene|55D7F05F8592A53A58A032C78B847782E598B268|xynC]
description
[Pubmed|20817675]
regulatory mechanism
[protein|E5110D9C36E8C55AFD1419987B14A53232165F20|abrB]: repression, [Pubmed|20817675], in [regulon|protein:E5110D9C36E8C55AFD1419987B14A53232165F20|abrB regulon]
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[gene|8A02D56A403BF2E34B84DF0F44347AA2D091D831|xynD]→[gene|55D7F05F8592A53A58A032C78B847782E598B268|xynC]

2024-02-11 17:47:37

ghost

52

179840ced7890abaa560fcb50f8da015378141c8

F409E4A43C7A24F2BBD3C1E0B4EDB68D10C30B23

Biological materials
Mutant
MGNA-B394 (ynfF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1393 NBRP B. subtilis, Japan]
BKE18150 ([gene|55D7F05F8592A53A58A032C78B847782E598B268|xynC]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE18150 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATTTATTCCTCTCCTTCGT,  downstream forward: _UP4_TAAGAGCACAAAGACACACA
BKK18150 ([gene|55D7F05F8592A53A58A032C78B847782E598B268|xynC]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK18150 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATTTATTCCTCTCCTTCGT,  downstream forward: _UP4_TAAGAGCACAAAGACACACA
References
Reviews
20735481
Original Publications
19407387,18957862,17028274,20817675,21256135,24271172

55D7F05F8592A53A58A032C78B847782E598B268

Page visits: 1797

Time of last update: 2024-03-20 15:19:44

Author of last update: Melvin.boenninger